NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10025494

Scaffold Ga0209089_10025494


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10025494 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4066
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005103Metagenome / Metatranscriptome412Y
F013469Metagenome271Y
F020257Metagenome225Y

Sequences

Protein IDFamilyRBSSequence
Ga0209089_100254941F020257N/APADHECLFGGYNPMPVGIKPEDLNPPHYGIHYYNPEDRRTADNWYYYATSAADYEKAKAEKYVMSYWKPDCGYVCWVSEGYKIKEIDYGVIPIGDSRPPSGVYALQEALRGGHDRIEVIGFDSIAGEFSVSLSNDRPEFELPSFPILEERMRKWLNYYRTVTEHYNEIEIIWHKQ
Ga0209089_100254945F005103N/AMKEENNNIQIFINKKEMPYSHQNMIRAINSFFPYLTNDDLNELSEYISTLKEHREKKESESKIEVEKHSWPYPDTKTQI
Ga0209089_100254948F013469N/AMIQGKGKKSNERHFRTSTGMSFLELMEELKRMRVQMRYFREIQKESELLDAEYYQIIRMQKRGELTLFELPDDTSESKEIT
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