NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10031119

Scaffold Ga0209089_10031119


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10031119 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3599
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F010477Metagenome / Metatranscriptome303Y
F012279Metagenome / Metatranscriptome282Y
F020795Metagenome / Metatranscriptome222Y
F023718Metagenome / Metatranscriptome209Y
F026028Metagenome / Metatranscriptome199Y
F072760Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0209089_100311191F026028GAGMSVCSNCYHRIKHKNAIEVGHLWNTEPFLAVVCSDKCKEEIEKLVTSQKKGDGNWMTMRAFPKREEDDGLPKALTDKQFGTT
Ga0209089_1003111911F023718GGAMSHIFMADNIDLSLNRSLKEMIASYWEALNAGIDDERESLNDFYALEDYLSSVGAV
Ga0209089_100311192F010477GGAMKIYVQIRYMIFVPYLIFIGIMGGNILAESIVIGLALAIFDYLFDDGGGGGRPA
Ga0209089_100311196F020795GGAMRTSTLEVLNEGELIFGTRTNGSYFVREYEDDEEVAGSFFKTEEEAKTYIETLNEK
Ga0209089_100311197F072760N/AMELHTLRAVKVTKNIFELHRVNTELQHLKICVKVLENRKIELENSF
Ga0209089_100311198F000615GAGMCRLRLFYECSDGAMGFAEHVMRYEEDIASFIKHWKTGGRMVITEHIDLV
Ga0209089_100311199F012279N/AMTERENVEGMLIENRLSELRDTVRTLETVETTLESLRETKWTLVKELKELGHDFRATAEGMDIVLSSSPSFNWS
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