NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10043544

Scaffold Ga0209089_10043544


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10043544 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2942
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049294Metagenome / Metatranscriptome147Y
F085538Metagenome / Metatranscriptome111N
F090244Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209089_100435441F085538N/ALTSEPIFKVGVGINYFDDPQGLIKILINDTVYDYVDKFYVIDGIYAGRNDKQESDHTYLNDLKDIYSKIHIVDMHNKTQIQKRNKYWELAKKDKMDYMIVCDSDEYMDIKPDRFNNSLRIIQDRPEKCYPVMQHMVGITTMSRPRLFKGPYTYRHKQNKKENTISHGSLYDKDDTEIINQMYAWFKDHPKRQINSDNQSGVDGIEMWHDKEFRTKERIIADRVYYDDTPNR
Ga0209089_100435443F049294AGGAMAGNLRYFGLGAYTGLIALWTAMGQIPLDLNTAIALLAPIALVVGADIVKHRQE
Ga0209089_100435445F090244N/AMDVETRIFEKLDKIEARINDLCVRLSAMEAEYNSHIRDLQTQQDRKLKRRDYTLVIMALGLTTVEVLRILDII
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