NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10044848

Scaffold Ga0209089_10044848


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10044848 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2892
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006146Metagenome / Metatranscriptome380Y
F074978Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0209089_100448482F074978AGGMTNILIGKFGKHISFDSNKWGMVGGDSESAILISCMAQCYPDVNFYIASRNDFQKIDSHTRNAINKNSNLFNIWEKYDSQIDNQSWINHYINSNDIKLDFGLFYGGPSSGSTIPNSMYLITEPDKTATPMSSSKRSVGIITKFLNDTGLPYVEIGEDPRYLPVQAKDLFIRSKKVLCVKDNITFSIKHIKEYLSREIIETTIPCSDIGHSYMFLMNEDKDDLLKEPGNRKTKINVAMHCTASQDGSVNKWNLVKNFILDPFPETFIYGKWDEKIIAGEHQNQFKETPMTDLHDVMYDTKYTLAIGGSKTWGTQSKFWKMLIFGIIPFLDPDNENIFGAPEFIQTKDARDFIEKVNFLENNHDEYIKLWNECQELIHVEGLWDGSIFFNNLGTEISNIFDIQLEKKGTIDYKSSSIFLNKNESSLSDFFKQ
Ga0209089_100448487F006146N/AMEILWAVIQKSKDLLIDCSMIISTATVIIVQALVVSWIVFTSPEPCPRKYRVTQEQGGVLASPVDIQRYCKLDYGGKWVIKDEYREEEK
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