NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10064079

Scaffold Ga0209089_10064079


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10064079 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2335
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001493Metagenome683Y
F017398Metagenome241Y
F072442Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0209089_100640791F072442AGGAMKTFKEFFQLGVTRPSKSDVQNYLNGLGTRLMQLSDIKKKIIHHFKNIKNLKLDSYGRKVLSFE
Ga0209089_100640793F001493AGAAGMKSFKQYLKEAPAWTESLSTMLFDLPREGLKDLKIPLSPAIFKRIWPESVRSRVFHLTDDEGIRTLKKIQGKKKSISAFYNIEDFILSSGIKTNGGYVVELEGDVLAAAPDDISSQPDKTGRRWLTFSSLMNPSTASDPGLGGKVKLKRIEKDLENLLVDILVKNDMGPYKKGLTTKELNRGWSYLGKSTGGKVKSIIIKDYIDGMEKIMKKYSKPLKSVFTDYAFDKELVPDPDSGDKALWDEVVVNNFKIKKIHVTEEFGEDFQDDDDIEGFPFELYPNGNGDLIDYIARTRNS
Ga0209089_100640794F017398N/AYIDGVNVILNKHKKEIQGAVHGYYVRRGTIAVKHASGRMVGGDSEIGEWSAWDEQVVDKIKIEKVHTYNTARRAGDWVKTDIIPKLGKIPHKHWKSTKELSTYISQVADAEVRVLRRSKG
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