NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209683_10266077

Scaffold Ga0209683_10266077


Overview

Basic Information
Taxon OID3300027840 Open in IMG/M
Scaffold IDGa0209683_10266077 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)789
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment → Wetland Sediment Microbial Communities From St. Louis River Estuary, Michigan Under Dissolved Organic Matter Induced Mercury Methylation

Source Dataset Sampling Location
Location NameUSA: Michigan, St. Louis River estuary
CoordinatesLat. (o)46.6972164Long. (o)-92.3279105Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027614Metagenome194Y
F046571Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0209683_102660771F027614AGGAGGVSSKVLITFLAAVLLLFSSSGLCSPEAQDKSKGAAEIVALLEKSGYSYKKVADGLWEVPGTGKNLREFAIRLALADDVLLVMVKLVDRKDLKVQPALSTKLLELNHKFDSIKLALSEDMLYLRMDTHVRLLDDQELKYLVEQIANATDETYPQIKQFVSGAK
Ga0209683_102660772F046571N/ALRIGKGQRMRAEVATGELFIRVIEGAWRMQIANSRLTVRHDEAVIIPSGFSHSAEAIEDSVAVQMEDDQENPGSCSRWAV
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