NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209580_10000007

Scaffold Ga0209580_10000007


Overview

Basic Information
Taxon OID3300027842 Open in IMG/M
Scaffold IDGa0209580_10000007 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)613108
Total Scaffold Genes539 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)394 (73.10%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000801Metagenome / Metatranscriptome886Y
F044098Metagenome / Metatranscriptome155Y
F047209Metagenome150Y
F101615Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209580_10000007139F047209N/AMARRPDLRSDEVMSPEDLKQYRNSLSRLSLDAVRHAYQTAYARCRMVNDRVPSARSIQELVQAWKQLWKAR
Ga0209580_10000007446F000801GGAMAAVEWTVKELIENLKRFPLDAKVYYEMGPNGPGTIGKAQYVKVWGDEEMGVLLDR
Ga0209580_10000007459F101615AGGAGMKSYYLHLRAFSCDICQGPVVTGSTAVRERDIEKETEITQVGAICLSCGHRQSEATAPGRTRDFPPVLWDPPKAALMGHTAGAYREMLNREELH
Ga0209580_10000007461F044098GAGGMHPEELMKPDLLSEIVLLTFGTLVLSSLLLFVLAAFARP
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Biomedical Sciences Research Center "Alexander Fleming"
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