Scaffold Ga0209580_10000019

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209580_10000019

Scaffold Ga0209580_10000019

Overview

Basic Information
Taxon OID	3300027842 Open in IMG/M
Scaffold ID	Ga0209580_10000019 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	240836
Total Scaffold Genes	223 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	146 (65.47%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005708	Metagenome / Metatranscriptome	392	Y
F006572	Metagenome / Metatranscriptome	370	Y
F014764	Metagenome	260	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209580_10000019178	F005708	GGAGG	MAASQVVLYFDRQEDALQFTLAASSIIADGAPLRETALKVAKEVCKASRITAEGSLGPDGKAKNKRN
Ga0209580_10000019206	F014764	N/A	MNNRNEEARVREPAGHPLVVRVTDNDFQREVLEKLARLEAKMDMLVGGQQPGRMKLAEDRISQLERNDIRRGVYDRLINAVVATAVSAVIALHGHWWK
Ga0209580_1000001980	F006572	N/A	MAHYPQCNPLHRATRLQLATTPALIKLDNGHLANASLQIVSTTGGLLQLTRALGEGDFVELAIQSKSGNIHGMAEMLRPMRSAPGSVFQPFRFVALGDDDHQILNTLIESASDSTFRGIRSSDWASQKS

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