NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209580_10053774

Scaffold Ga0209580_10053774


Overview

Basic Information
Taxon OID3300027842 Open in IMG/M
Scaffold IDGa0209580_10053774 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1881
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005154Metagenome / Metatranscriptome410Y
F026990Metagenome / Metatranscriptome196Y
F044053Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0209580_100537743F044053GAGMATLSLRRLWTIYKRTAIKRGLSRRELASIQLAFYSGARGVLRVMAYLVEHGDYEELHSSIKRHDRQIERIRSRRPRARDH
Ga0209580_100537744F005154AGGMGRTTGQWRCRICSFDRWHIVSVKRKNGALYTTSFYACSCCSVMFLNPEQFNAFGDAAPNVEMPTVISLPARRK
Ga0209580_100537745F026990N/ARIPRVSPPPEAVSESSELTSEQKRRVLLQWKDQLQQLQAADDEGMRQNAAAASTTDDFLKRVMTVLSRIDADLKGVSNSGMTSSSR
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