NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209390_10213322

Scaffold Ga0209390_10213322


Overview

Basic Information
Taxon OID3300027848 Open in IMG/M
Scaffold IDGa0209390_10213322 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-01 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1645
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Bonney
CoordinatesLat. (o)-77.714Long. (o)162.445Alt. (m)Depth (m)83
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003552Metagenome480Y
F006034Metagenome383Y
F061579Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209390_102133221F006034N/AMLSNHDIDELVTKMGISNFKGCFYKDKLTKIQPNSSYIINLNSELNEKGNRNTGSHWCCLVTDDMKQCIYFDSYGEREPVEIRNLLKSKQ
Ga0209390_102133222F061579N/AMNITLDLSKGQLSKLRNGHGIRISPTMLGSGVEMIIDPMTYHNISKKMDKGKGIVIKLGSNEIEMNKIQGTGLFAGSGNQSGKISRVKKAKKWTGYANDTARMGIDTAKYGYEKYQEAKNPVQSGLKKMFGFGEMNQDVEGGKISMSAIKQSYNKNVKNTKLGKALKETAGNAIGQVYDTGTNMIGNTRHLSGIADALKKSKKGNISKLTQLTGLGLKLQGEGMKDARYRRPITLGNGMRMSGGACNGCGMEYNDKFIFENVSL
Ga0209390_102133223F003552N/AFNHLVSNGISNLKAVLIIPQLNTLNNNVNAFDDGLPQLMGHINNFNVLVGGSNVLHQDSRYTYQQFNNEFFHEFGINGNQSSGLGSSLIDFKSWLKKPYYYVNCSRVPMEQQNAYRSLQIKGTNSSSLAVDYVIFAIYSKSFSLDVISGNITKTD
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