Basic Information | |
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Taxon OID | 3300027853 Open in IMG/M |
Scaffold ID | Ga0209274_10000004 Open in IMG/M |
Source Dataset Name | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 317487 |
Total Scaffold Genes | 301 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 207 (68.77%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: New Hampshire, Hubbard Brook experimental Forest | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000579 | Metagenome / Metatranscriptome | 1011 | Y |
F002270 | Metagenome / Metatranscriptome | 576 | Y |
F007711 | Metagenome / Metatranscriptome | 346 | Y |
F022467 | Metagenome / Metatranscriptome | 214 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209274_10000004117 | F022467 | GGA | MKDYSSHFRELVELQLPDDSRILMPRGGQDMMILASWRLSTDAFRASKRSRMIRILISEEAISNYARGSDGERLAGDVRFVAWLKRQLSAFDPDHDSPLGVEPPAVTWPVSTLELNG |
Ga0209274_10000004134 | F000579 | N/A | MAPDNAATISVIDYRRRSMVLQWHALGGTWTASDNPHAPVHGIALIRVSQPNICVFGQAGRLRLQVGPNQYALSENSPRISCTRGLASFGFRRRFAVESSAGGVLYSYSYWTNQRHDFFRWLAIKAEDPDWRVASGRQWSEGLAAAVLRAA |
Ga0209274_10000004248 | F007711 | AGGAG | MNTQISTKLAALAVALMMNSVIIGGVAYLFNSQLHQHAAISSLVQSAAPASTDAA |
Ga0209274_1000000461 | F002270 | GAGG | MSELKNQPRYTGVDRRAPRVEPGALKPGAAQREIYKTGGRHGAITNTLYNWHSYKNWAEKIRGSWEEKK |
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