NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209274_10000030

Scaffold Ga0209274_10000030


Overview

Basic Information
Taxon OID3300027853 Open in IMG/M
Scaffold IDGa0209274_10000030 Open in IMG/M
Source Dataset NameReference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)149006
Total Scaffold Genes128 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)102 (79.69%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001701Metagenome / Metatranscriptome649Y
F006203Metagenome / Metatranscriptome379Y
F007926Metagenome / Metatranscriptome342Y
F021069Metagenome / Metatranscriptome220Y

Sequences

Protein IDFamilyRBSSequence
Ga0209274_10000030101F021069N/AMSMAVNWIELAQKMAQAARAGVAIERKRLQEILADRQRKQPPQSSSPSR
Ga0209274_10000030118F007926N/AMAHREASPTATLSLRLLLLILCVSVPASRLAARTRTAALDSSYVTALAAADHFLQAWQSGDVESGMSLLTGQAKQLATTDAVEKFFSGADASAYEIGRGKLLKRDHYEFPVVLVIGSAGTTHLRRRFSSIIVVNTGNNDWAVDKLP
Ga0209274_1000003015F006203GAGGMLESTVELLGGLCLSALILLISFCIVGSIVAALRAVGRGSSAVSARR
Ga0209274_1000003086F001701GGGGGMNSASSIKFLYAAYIATWLIHALYIGSLVRRYSRLRQRMKDLGK
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