NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10000092

Scaffold Ga0209517_10000092


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10000092 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)148384
Total Scaffold Genes154 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)98 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001709Metagenome / Metatranscriptome648Y
F009978Metagenome / Metatranscriptome310Y
F017346Metagenome / Metatranscriptome241Y

Sequences

Protein IDFamilyRBSSequence
Ga0209517_10000092137F009978AGCAGGMEASPATVLVFRDQRTQEVQNYAIVGQTLWNFARQRTQKIPLADLDLAATTKANDDRGINFHVPGVSEAQ
Ga0209517_1000009220F017346N/AMGIFDAFRKEEVVGSKALVCQLGTGQGTKFDEELKSDLRVYKRFYPAASGATFTTVVELRGAIGHKYDVLHLFCDVGAGGVIADPSGDRITGTELLAAAVDSGVKLLWIGNDNPQEAYDAGFRTKGLKINVVLTLRRLGSNTSLFLDSLLTKMQAGETFSKVWDVASHPEGKSVQPDVPHVVVSLGRGTVVLR
Ga0209517_1000009234F001709GAGMPQEVSVSYQAIKSKVYRLIDTLVVGEKTEAEIHESIRRWWDLIHPADRPIAQKYLLAVLERSALALDAIDDGLTAATAESKIRPPDSSKTLKLVDRIVKQTVKQANISPAV
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