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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027854 Open in IMG/M |
| Scaffold ID | Ga0209517_10000159 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 119259 |
| Total Scaffold Genes | 109 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 92 (84.40%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany: Weissenstadt | |||||||
| Coordinates | Lat. (o) | 50.13 | Long. (o) | 11.88 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F060538 | Metagenome / Metatranscriptome | 132 | Y |
| F089732 | Metagenome / Metatranscriptome | 108 | Y |
| F089733 | Metagenome / Metatranscriptome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209517_1000015977 | F089733 | GGA | MNITIILFILLAVLLIGALIWAVQPPKRKLVSIDDVLRALTEEHHYSRLPQILQALQPEDTAFLRARGFATLRRRIRSERGRIALLYLDCLQEEYEKLLEASRVVAAMAPEMVALDEAERFKLNLRFALGCRYLRWRLLLGLEPWRGFGRLSETTSGMALRLEMATSQIGERSALSLAFASILKKRDDGTQ |
| Ga0209517_1000015978 | F089732 | N/A | MSETLNLRNLEWALTTLTELILFVYLVRRKLFRSHPIFSAYILGAILQSVLMAATYGIWGTQSYRAWLTYWLSQLVMETARFAAVAEVVRRVLSPFAGIWALGRRVLIAAAGSVFVYAALLSREYYRKYPLNLDRGVGLAVAAVIVTLLLFARYYGLPMNHLDRSLCIGFCLYSCFAVINDSILEKWATGFMNLWSFLGVLTFLASLLLWLGAARAYSETAPAGVPVIVPKELYGRLSSELNVRLRLLNEHLNQLLNSGNPRS |
| Ga0209517_1000015998 | F060538 | GAGG | LKTAPARACISAQHWFQPVGMGRTVALLRLRQMSPLRRWLGRVAFLAAICLSWAFVAHAQNEAARKYTWKPLEFAIVRFNDEAPNSWNIYHCEKKGLLLVRLWKRYLFIDVEEEEVYDLDPQKLTIQGNSVTWSFADLPDKPIHTPDWTDRNVGRMQRLRFRLGKDGHVLELQLPFDVNGRPIY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |