Scaffold Ga0209517_10000161

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209517_10000161

Scaffold Ga0209517_10000161

Overview

Basic Information
Taxon OID	3300027854 Open in IMG/M
Scaffold ID	Ga0209517_10000161 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	118872
Total Scaffold Genes	111 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (27.03%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.13	Long. (^o)	11.88	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F088102	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209517_1000016162	F088102	GGA	MIVEDNFFPESKQHPSTITVMEICERFVAAGLPCQTECHEDEVRIVFAGRKCSLIFAVNASGCPLTASMPDETDYDADIACILFEVFESIGWTYAPG

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