NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10001226

Scaffold Ga0209517_10001226


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10001226 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39706
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (74.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000290Metagenome / Metatranscriptome1362Y
F000407Metagenome / Metatranscriptome1172Y
F052799Metagenome / Metatranscriptome142N

Sequences

Protein IDFamilyRBSSequence
Ga0209517_1000122624F052799GAGMTLAQRQWGGDTPLARAALLRWGALNLAFQDKRLETWTVTRERDRIQVPAALVAAAGIAPLVIDNERAVFDIPALLDATLEFQPPAGQA
Ga0209517_1000122633F000290N/AMSKSPNARRLGGPLSWEDLSRPDADQNQRFLAEALSLLLADLLRSVLSDASPALPADESAVERYRNLADSLADGESRRRTSLGITRAGLAKRCVTWLKLLLTPAPNSSSAAPMREFVDALGLFPALFDSEPSARSRRARLTWLLTHDRRLDASTREAATALIEACEHLGVLLWPDAETA
Ga0209517_1000122636F000407GGAGMLRFAAAAVAMAGFALAACGHSGYAVRPIPRIAAENVGKPVSRLRDAFGEPRKIETTPTKLVYVWFLEQTPAGAPTGFHGCEMEVSVDPRSEHVLGYSLSNIGWARCPDIEREIRIAER
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