NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10001935

Scaffold Ga0209517_10001935


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10001935 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30302
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000985Metagenome / Metatranscriptome813Y
F001878Metagenome / Metatranscriptome623Y
F005307Metagenome / Metatranscriptome405Y
F011616Metagenome / Metatranscriptome289Y

Sequences

Protein IDFamilyRBSSequence
Ga0209517_1000193512F005307GGAMDKSVAVRAALKAGVLGVFIGMIPLLGIVLTGALAVYFYRRENGLALPAALGSRLGGAAGVVAFAINALLITIRIFVFHAGQEYTDSILKIAQKFGVNVADPDIQAGIHNLFTPSGLAITFFFGMILTVVLASVGGALASLLQRSRNTRV
Ga0209517_1000193516F001878AGGAGMSAPSRRPEIRRRRTRAEKVAKLRKRLAAASASNDKDRLTAKLNRVGLVSPGNPLIKSA
Ga0209517_1000193526F000985AGGMKNVYEVLRQKELELTRLEKEVEALRVAAPLLSDEKEQQLAEVPKPGLTASAPQQPVRIPPVVAAQASNAPSRVAGWEEAAKRWP
Ga0209517_100019358F011616AGGVNASVPPKPAADSEHQEDKHQHHHSIYAAEATGLLLMAVLLLILTLIHYWRYIPWSVR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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