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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027854 Open in IMG/M |
| Scaffold ID | Ga0209517_10002810 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 24163 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (87.50%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany: Weissenstadt | |||||||
| Coordinates | Lat. (o) | 50.13 | Long. (o) | 11.88 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003859 | Metagenome | 464 | Y |
| F004817 | Metagenome | 422 | Y |
| F005112 | Metagenome / Metatranscriptome | 411 | Y |
| F016632 | Metagenome / Metatranscriptome | 245 | Y |
| F051636 | Metagenome / Metatranscriptome | 143 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209517_1000281010 | F051636 | AGG | MYLEIYAELTKLVFDRELTLEPPRNPDGSVKPVADGILGGPHTLDGFLDMAKAAGVTRKYEPITWESDRVRADYGHLNLDVVVEDTLVRMVGSTPNPASWLGIVDVPDGQYRLEHGLLATEDDGEPSPQPTTVALPAVNGFEQRLKDITLKQQDRQRIEAELKLFQAQIGQRVTVKPVTYHNPKTRQDEPAAQVFLEGKSEPLCWVSREHLSAVTRELPGILVSNGKYSLTAICTMPEQGAHS |
| Ga0209517_1000281012 | F004817 | AGGA | MPKTIAVVKLPEILGNGSSHSVKLAGKIDSFSLLLCETPEGELKRSIEVQFHSMVFATRKEIRKYCPRYRSLPGEGILDFNTDCTSGQLEPGDLGQAPPPKRGKLCETCCFFAGIPEENDSELTVSEALQDLLPVASSRTLRTRTCLHS |
| Ga0209517_1000281014 | F003859 | AGGAG | MNEQNAEQHARLECTSTPGRSWSGASLYKSLKLGWNWRRLRWAVAAASEAAQGHEANGVRSGAQEFKTLYNEVAKKVQAYSHESRIPIDTLKAKLPALCAIERLANPEANVPQNRLGLTLGVLVAGVAGSIGMGVLIGLGVGMAHWIARLFA |
| Ga0209517_1000281015 | F016632 | AGGAGG | LTGILEAFALAEIGSGIGFLASWRNKVLKAKVNYFRQPNNRSSPFAKVLRGKVGRAVTRQDRLRLQLADGLVNLIRKLVQYDAFRQIVRGLALAHSPMRQALRKKGGRPW |
| Ga0209517_1000281021 | F005112 | AGGAG | MSLVAKYKLFWAACIAALWGLAFWKNSKSYPHKSRLWRLGKSAIDTGLVLLMVLYAPALLLMYVVIWLTSPFKNKIMQSTAAFASILAVSHLAGIVFEAVAVFGVFAVDLLAGQVVARMDRRERNKLAKAA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |