NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10004206

Scaffold Ga0209517_10004206


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10004206 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19054
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000072Metagenome / Metatranscriptome2651Y
F007046Metagenome / Metatranscriptome359Y
F089241Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209517_100042065F089241N/AVQQRLTAHVDTASSQALTGTERVYFMRVEGNRLTMKSPGVIVPMTGKTSIVEIELVKAD
Ga0209517_100042067F007046N/AMPSTATFHDSRRSTRVPLKVVITVVEGGAESRTCEGETIVVNLHGALIASAIGLSRGMRISIHVYLTDKRAAARVVYIDPKNPLHCGIELDEPRNIWGVSLPPDDWDERDQQ
Ga0209517_100042069F000072GGAMDAEQTIAEIEYLERIFAVPDTRPLSMGDLSAANRRHDDMLAHSPWFRLWQRYGICCRPESPVISRAEIDS
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