NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10020479

Scaffold Ga0209517_10020479


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10020479 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6167
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004823Metagenome / Metatranscriptome422Y
F006399Metagenome / Metatranscriptome374Y
F017965Metagenome / Metatranscriptome237Y
F029198Metagenome189Y
F055156Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209517_1002047910F055156GAGGMFRAEIQWLASGPTLKLEGKLVADWAEQARRLVTKDVLPEGLIVD
Ga0209517_100204795F004823AGGAGMYATKAVNGIPAIQRDGQSVLSVCDQNWEFANWLCALLNELGCKSDLLLNEHDREWLKAIDSPFRRTVHHA
Ga0209517_100204797F029198GAGGMDSKPNSRAVRVGGEVIVLHCWACGTAHCVNQESCVLGELFHMVCSNSNCRMSMFLVNELVLGDKARKQMRRSELNERVSYSRFWK
Ga0209517_100204798F017965GAGMKRSKANLFACHLEWRTKRNLAAYQELLAALDDHNDDIRRLAESLLHRSSPRPERTATFVESW
Ga0209517_100204799F006399GGAMTTPALNSRVQSLVTEYGVFWQFWPQFEQIHGDRRLVGFEVELIGCHTSNLNHVDPRCPICRTVRAVLLSIANLVPEDLAVGANFFKYHIDSHSGEILCLPALGNRAAVWVSIYLSWNRSNGQSLETDLLTEVRTLLNKWGILQR
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