NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10029200

Scaffold Ga0209517_10029200


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10029200 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4699
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042700Metagenome157N
F071899Metagenome121N
F104335Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209517_1002920010F104335N/ATEDNNAVTFRTFVPAEELVDTVNEALDAIFEIENPEFYDEPETTTNGCFAMAQGLAAVEPPPTVNVHVEVHV
Ga0209517_100292005F042700N/AMDAQKEAYKLLKEHGEQVRHNKHEAWRINGHLITITKTKTDDRGWLNKLCEIRRCLKTPAEEVYRQARCNGKDRFSDAPAAQHSASCAGPAATR
Ga0209517_100292009F071899GAGGMQARVKLTPRIIARLIVGKPVTVNLPADTTSLSLVTEGKFHEFLRAFHAPEEFEPETSHTEVIGLFDLIFGRH
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