NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10034521

Scaffold Ga0209517_10034521


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10034521 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4145
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008511Metagenome / Metatranscriptome332Y
F064949Metagenome / Metatranscriptome128Y
F073232Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0209517_100345212F064949N/AMLLFESLSAGVMAIFAGFVLVTIVVGFYVIIIWPLTFWDLANLGLEKYYSWINPILWSLFASGSLAGYWCFGGAAFKSRQKASVPSTAKSRR
Ga0209517_100345213F073232AGGAMPDWTSLKWLGWISLYVIPVVFLPWAISRAWAHQHGSDLRPRPKLLFQRGELGLLGLVLASSVIWNLLQSQFMPHTIALGSVLMALGGIMAASVWVETYCRESGMKSWHPKRAWRDSRNLALLVFSMAAVMEILLDRFAKVASR
Ga0209517_100345214F008511AGGTGGMSAPAVARATVHERIVVVRLADAAEAIAFLSLVFGLLLVLLPVSFPKMIVNSWERGQLMPVMMGLALLLDTCLYVRIAIMRSAKPGLVAAACLGSLPLLVVGGLSLLLQSAVSHTLALDMSNLQLRVGEEILAHTYLGLISAVFLPFLVIRLLQQFKATNS
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