NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10040216

Scaffold Ga0209517_10040216


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10040216 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3710
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008704Metagenome / Metatranscriptome329Y
F052336Metagenome / Metatranscriptome142Y
F087101Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209517_100402163F052336GGAGLNVRELIKEQRRRLRSGNPVERFAAALLIPAVLAERLAGLADRQVGQLLLDEVWPGLSPLAPESTICLHAADRLCGSPKEKCPACPRCGSEMIRHVGIDEPDFLECVLLSCGHREPA
Ga0209517_100402164F087101GAGMTISDDVSNPGYTPLRVSAQGIRHLSSLTQFHPIADNVLIRLAERRTRLTVPDRWVAIALILGNRIPIPVPLPHRQRKPSEATAPAKLVAINGGRIAR
Ga0209517_100402167F008704GGAGGMDYCHVFVLTTLALDKKGDVKSRNVAVTFDLFEAEDHRNEGVANDYEVFVVPCDWQEDAAQFELISAMREFRNIVKQMQDEALR
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