NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10047453

Scaffold Ga0209517_10047453


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10047453 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3290
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004185Metagenome / Metatranscriptome449Y
F006683Metagenome / Metatranscriptome367Y
F015081Metagenome257Y
F015375Metagenome / Metatranscriptome255Y

Sequences

Protein IDFamilyRBSSequence
Ga0209517_100474532F015375GGAGMQIGKPLRTIVVEPLELPVEQPEREPGPKPIQSPESEPEQVPAKQ
Ga0209517_100474535F006683GGAGGMNKPHRADVRQVDLKVNGITFESVRLRRGCGSDDFDILIDDPNVGRFALTAAVPSLELRDEDSDWRQVTLHELKKILAGDELTEVAEEPQASEAAERESFNRRVAEGEHIMNAEIALFRAGIPFLQLPFQQNKFVSNLFMVLNLSKAKACLQRAGFQPKVESETVLFDSRNGQPIQLIQGKYKLRESES
Ga0209517_100474536F015081GGAVRLNRENITVDALIEEQRRLSASTNPFERVLGSLCIGAILKEQLVGLPNSTISQLVTDHIWSDMNLLGPESVIVEIASERLIERCETSLVCPECGSEFWRADE
Ga0209517_100474537F004185AGGAGGMSLQKEFIRDGKRRIIGSVTTGYVGSFETIVRDEQNNITGSTSERFNTTRDEHDSLISINSADPGLLIHRKK
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