NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209517_10048736

Scaffold Ga0209517_10048736


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10048736 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3228
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F004823Metagenome / Metatranscriptome422Y
F006278Metagenome / Metatranscriptome377Y
F010114Metagenome / Metatranscriptome308Y

Sequences

Protein IDFamilyRBSSequence
Ga0209517_100487362F004823AGGAGMYVTKAVNGVPAIQRDGQSVLRVCDQDWEFANWLCALLNELGQKSELLLNEQDWEWLNAIDRPFRRTVQHA
Ga0209517_100487365F006278GAGGMFRAEIQWLASGPTLKLEGKLVADWAEQARCLVTKDVLPKGLIVDLTDVSYIDSVGEQLLKWLASVGAGFVAGSVYAFAVCDRLRLSPMQRIAERRKRRHGNNEERSLIRHSLPVEAI
Ga0209517_100487366F001596AGGAGMSWFHSSTAAVDARNYASPSEIVACFQDQRNVLGRLAFLITGDQAMAEQAAVHACEMTLQGNSPFRDWLFEWAKAATIASAISHGTVAIRICEAAYKDRRCPHVEHLSRGDAEERAASLDLILGADAQKLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSHAAVLGANCHAMKWLHDASHATQF
Ga0209517_100487367F010114GAGGMIIELNDDDTRLLYTVLLQQAQEHLSYADTSEVVERLYKLATRFERPVKELPI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.