NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10098698

Scaffold Ga0209517_10098698


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10098698 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1974
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022134Metagenome215Y
F039954Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0209517_100986983F022134AGTAGGLAPPVPVRLTVWVGGMELSVMVNVPVLVPVAVGLKVTLRVQEAPAATLEPQVWVWEKSPLALMLVMLSVAFPVFLSVTV
Ga0209517_100986984F022134GAGGVPTVCEGNVKEAGERLTAGPAPVPARLTVWVAGQALSVTVKEPVLVPLAVGLKLTRRVQLALAARLEPQVLVWEKSPLVLMLLMLSIALPVFLSVTL
Ga0209517_100986985F039954GGCGGLSAMITVPVLVPVAVGLKATLMVQEAPAARLELQVLVWEKSPLAVMLVIVRVAFPAFVRVRL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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