Basic Information | |
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Taxon OID | 3300027854 Open in IMG/M |
Scaffold ID | Ga0209517_10098698 Open in IMG/M |
Source Dataset Name | Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1974 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany: Weissenstadt | |||||||
Coordinates | Lat. (o) | 50.13 | Long. (o) | 11.88 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F022134 | Metagenome | 215 | Y |
F039954 | Metagenome | 162 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209517_100986983 | F022134 | AGTAGG | LAPPVPVRLTVWVGGMELSVMVNVPVLVPVAVGLKVTLRVQEAPAATLEPQVWVWEKSPLALMLVMLSVAFPVFLSVTV |
Ga0209517_100986984 | F022134 | GAGG | VPTVCEGNVKEAGERLTAGPAPVPARLTVWVAGQALSVTVKEPVLVPLAVGLKLTRRVQLALAARLEPQVLVWEKSPLVLMLLMLSIALPVFLSVTL |
Ga0209517_100986985 | F039954 | GGCGG | LSAMITVPVLVPVAVGLKATLMVQEAPAARLELQVLVWEKSPLAVMLVIVRVAFPAFVRVRL |
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