NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209166_10000013

Scaffold Ga0209166_10000013


Overview

Basic Information
Taxon OID3300027857 Open in IMG/M
Scaffold IDGa0209166_10000013 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)289281
Total Scaffold Genes271 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)208 (76.75%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000887Metagenome / Metatranscriptome848Y
F012699Metagenome / Metatranscriptome278Y
F012993Metagenome / Metatranscriptome275Y
F013326Metagenome / Metatranscriptome272Y
F014647Metagenome / Metatranscriptome261Y
F018720Metagenome / Metatranscriptome233Y
F021578Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0209166_10000013182F012699AGGAMRSLIIGFGLLSVTGSISPAAADNGPLYVAPGPSNLIAPDVVRRNQEQLAGTARKLGDLIGDSLKSPTSHATDLLVTTKCGRYLFATISYADGSAKTLNLGNAPAIQSDMDKAKAAIPILRIVDQPGCDR
Ga0209166_10000013198F018720GGGGGMANSSSSRISTVAFIAILTLSACTMLWLFWRFPLVTALITLGVFLGLGVLARFARSLDVDMTDLDPTNQGV
Ga0209166_1000001323F013326GAGGMDDRDASARSLIHARLAQSREELRSILDPPPGDKGRGGMPGEGTGGFPRSRIMRTLLSGRGLGTLGALASGLLLARPALALRLLKLVPASAVAKILMAKAMGALKSKSAAE
Ga0209166_10000013244F014647AGGAMGPKMRRNFSGAFLARDRGNGTWQLTRAAPHGMDVFLREAERGAARAFGTAPIVELEIEWHARKVLLTFMAGDRLSSVEGASAIVHEPFGRLYESLPLATIDADARRFWRRIFRLVRLPGGRYLLKLLTRLR
Ga0209166_10000013262F012993AGGAGMYTSISTKLAALALALMVNSVIMGSVAYMFYAQQAPTSITALASNTAPSANAG
Ga0209166_1000001351F000887GGAGGMRTLFKLLIPISIVAMSGCVVAPYGYHRGYYAPVAVVAPAPVVVVRPYYR
Ga0209166_1000001361F021578GGAGMIRKLRLVLGAGICAALCGCVIGSGPCLWLQVRHDFTGRIHFREFPRADGVDTVPILILDKTEYVYAPPQSFLCLPANDVQLVGVTEFPDSIGENTHVVVDGKFLEGVAQGHYTRFVIQVNGVLPLRTPERASEHTPERALEPVH
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