NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209166_10000052

Scaffold Ga0209166_10000052


Overview

Basic Information
Taxon OID3300027857 Open in IMG/M
Scaffold IDGa0209166_10000052 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)156859
Total Scaffold Genes147 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)126 (85.71%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F000065Metagenome / Metatranscriptome2788Y
F000274Metagenome / Metatranscriptome1399Y
F000309Metagenome / Metatranscriptome1327Y
F000850Metagenome / Metatranscriptome861Y
F001829Metagenome / Metatranscriptome629Y
F001932Metagenome / Metatranscriptome615Y

Sequences

Protein IDFamilyRBSSequence
Ga0209166_1000005237F000850GAGMKKPELTDMGWLGPKDEMDRASHLIGKCSECHETLCVEKAKADRQQTQLETREVLDQVFRAHIKLKHSEDFSHSG
Ga0209166_1000005242F001932AGGAGGMRQKLVLWFLLVLTGFLIGFILQYSRLQRVQQDLLASTKQLGSCRSSQQLAQLRDTTTMMYLEVVQKNYGKAGEYSGAVFDQAQQIASSTEDPALRNFLREVLVTRDQITADLAKGDPAALSEIQRLLSNLEHTAKH
Ga0209166_1000005243F000065N/AMTHRTKEPIPKLRKAPQPPLSHAGAIPDSDRAKRPPLSEPAATSQELTPGDRVEGLGDFGKPTGEFGTVKQANEDDAVVKWDDDGRVRVHQPSLKKV
Ga0209166_1000005257F000274GGAGGMNLKIVTGLIALFMFASAAGLATAQDTTKTTHKKTRTLTGCLQKGEDANEYNFTAKDGGTWEIKSDSVKLDEHVGHTVKIVGVVSNAMAHGMKEDTKEEMKEHGMDKHAKESGHMTVTSLTMVSDTCQK
Ga0209166_1000005272F001829GAGGMRRQYLHLSAYHCDSCAGPVIAGWLGVRENEISKETDVRHVGAICLSCGHRQRAATEPARARHLMPMEWAQADAVLASRLKSAFVEALNLAELQ
Ga0209166_1000005278F000309GGAMSADCVTENPRMEADAKPSLDRTLECAIVVSWSDLTHGTRTDLIHVEYGFAPTGMLEYLKVWSSIARGHWLLACVCWTSENTFHSTGVRFDNGYESEGLAHILEFVMQHQNSFALPPNLGRQGLLQISTPTAEESTAAAALIKEVFDHLPSTVAEPAVA
Ga0209166_1000005280F000042AGGAGMTNIKFVVRVNHSGTRAPAYVQRIGKTPFQMTNNRKLALIMGKFTAEDAARSMQNSRCTPEIVPVQVSA
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