NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209166_10000153

Scaffold Ga0209166_10000153


Overview

Basic Information
Taxon OID3300027857 Open in IMG/M
Scaffold IDGa0209166_10000153 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)91645
Total Scaffold Genes83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)69 (83.13%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000626Metagenome / Metatranscriptome976Y
F003527Metagenome / Metatranscriptome481Y
F010511Metagenome / Metatranscriptome303Y
F025246Metagenome / Metatranscriptome202Y
F027443Metagenome / Metatranscriptome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0209166_1000015318F000626AGGAGGMSIVKKAPGLMSREVKLEEPVNQLLEDYARFIESSPDHVVNCVLKKLWRDQDYRKWRDQRRAAAQAAAGGKDQPVETRGRA
Ga0209166_1000015336F027443AGGMSKPDPYGDWVLFPASEGESKNPSVADNELILAAREVWPRVLAHAKKELNANSLGSDNSSMAAQVWEQMLRSVSKTRQRNTYPRQPIADLQSYLFLAFVHRFNRAVQQEQRHAERIELVSSSVDLERIESAQDVGWVEELERAIAIKEISDRMDGWTRKVWQARQYGYSWKEISTWLGISEQQAKMKFHYGLEKTRQSILRLLKAGKPKRG
Ga0209166_1000015354F025246AGGAGMDLRCPKCNSTDLKKVSLAHEEGLFQNKSRTRLRAVVVGGGGPDIVVGRATTRATEQSALSKRLTPPMKWSYLKVIGWSILVFLCAGWLVFYVNTVATNSSTVWSLPLTFFTLISAAGFALLLFLVWRHNHSAYAQEYARWDRAFICQRCGVVSEQDTRSGQTI
Ga0209166_1000015365F003527AGGAGLSMLKSPPKQPKAVTIQARVEESVKNQLELYAEFIDASPSYVITEALKLLFRKDGDFRCWVDERTNNHNNEKANGKVLAKVV
Ga0209166_100001537F010511GGAGMGLVRVAPSFLRCLVIAAVCFAALPSSKAQTVDVSGSYQCTQAKVQGKVIACTAAPLILKNDGHFELRGWEGSYLVDGQWVELSDSLTKARAKIAPGHKIVLRYYGKHGWTEMTFERRVAELGKTSLS
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