NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209166_10000365

Scaffold Ga0209166_10000365


Overview

Basic Information
Taxon OID3300027857 Open in IMG/M
Scaffold IDGa0209166_10000365 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53218
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (76.19%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F000781Metagenome / Metatranscriptome895Y
F000885Metagenome / Metatranscriptome849Y
F002750Metagenome / Metatranscriptome533Y
F002853Metagenome / Metatranscriptome526Y
F007488Metagenome / Metatranscriptome350Y

Sequences

Protein IDFamilyRBSSequence
Ga0209166_1000036518F000885AGGAGGMSNPKSVFAGEIAQIAGVISAVAGVVMSLHHWPAAAALIGGAAAFFVGKKLRAQ
Ga0209166_1000036521F002750N/AMIEFFKKLLRSRYVGLLEGEVVRLRAENRALTNSLLGTAGFPPVDFPEAPKMAELPRTRRRSWHQIQAWREQSAKQDAAETDRSGRG
Ga0209166_1000036526F000512GGAVIQVVRETHETPEAVARRLELAGGRNRFGEANYRAVWGWNRLAWIGGKFEDRDERGVLLRERIELRKEPKYPAVNRWHIERWVPPEVYGSPRTWYAQTNEHAGGQNIPALGPYPSRGDYEHCFTLETPKGEFIQLTATIADYIARAIEYSRCKPRARSREKLYDRETREDRAYEEWAFDLLDDQVPAFHKQPFITIA
Ga0209166_1000036528F000739GGAMTRLAIWLKGILAAAISGAAGGVLTGFAAVGIDPQHFNLQAGIGATLRIGMAAALINAVIGVAAYLQKSPLPSE
Ga0209166_1000036538F000781GAGGMLTVAQLAPLKDRDPYLYETLVKIVSAVNSTSQRAGVDPSTPAPAPPSVASLTVSAANGWFDLAIADPSNSRPGLFYFAESDVTPGFNSPRVYFMGASRNLYVQLGNQTLFWRAYSQYIGSQPSAPVTFGNPPVAVAGGGLSGPAPLPSQGSGARPNGLLRGGNGFGIHAGSRVVRNSLL
Ga0209166_100003654F000188GGAGGVSVKPELAFDVCWEVYRGAREVLETKRGISALKPEKAGKFLWRPDVHARLNEWVADFALAGQAALEEPVRASRMVMFRMYYLGMAPYETARHFLGLSETNWVQWSEEIRRRCGAEMLRRGMFPPRKYFGA
Ga0209166_1000036540F007488GAGMLVREYREEDLAELECIHSAQGFPYAFPDLRNPLFLAKIVLADGEGPGEKIRGAALLRLTAEAYLLLDPSQGSPRERWQSLLALHGAAHENAWGRGLEDVHAWLPPPIAKKFGRRLERLGWLRDDKWTPYCKRLERPNFA
Ga0209166_1000036541F002853GAGGMGRGAQDQTRQLTDQQLASINSLNQQFLGQQQQVGNLLVPQFQSILNNPGLSPADKAAVTGQSQGALASAFDSLQQAAANRAARTRNSAGFGELADDLARQKGIAEAGQAQRNQLDFTNTAFQRQMAALQGLSGLFGVDSNLLARGLGIPADLLSVRANASRNNGGFFSSLGSTLGGTLGALPGAFL
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