Basic Information | |
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Taxon OID | 3300027858 Open in IMG/M |
Scaffold ID | Ga0209013_10080959 Open in IMG/M |
Source Dataset Name | Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 2 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2176 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine → Marine Microbial Communities From The Santa Barbara Channel Oil Seeps |
Source Dataset Sampling Location | ||||||||
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Location Name | Coal Oil Point, Santa Barbara, CA | |||||||
Coordinates | Lat. (o) | 34.39192 | Long. (o) | -119.84578 | Alt. (m) | Depth (m) | 47 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F051143 | Metagenome / Metatranscriptome | 144 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209013_100809592 | F051143 | GAGG | MMHKATRQDELDRIDTLTIMEAVAYANRLSVRLKCRDCADEERKSGLELLGRLTERVQFLKITLEPSTFCRIGWSY |
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