Scaffold Ga0209013_10182743

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209013_10182743

Scaffold Ga0209013_10182743

Overview

Basic Information
Taxon OID	3300027858 Open in IMG/M
Scaffold ID	Ga0209013_10182743 Open in IMG/M
Source Dataset Name	Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1284
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine → Marine Microbial Communities From The Santa Barbara Channel Oil Seeps

Source Dataset Sampling Location
Location Name	Coal Oil Point, Santa Barbara, CA
Coordinates	Lat. (^o)	34.39192	Long. (^o)	-119.84578	Alt. (m)		Depth (m)	47
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F105195	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209013_101827433	F105195	N/A	MTVLLIWSLLDIQSPRIITSDKHVIDLLETDPVIWAGYISEENKLRVVTEIHRWESAVAAGADAIEAHGYAVGGTGVDFQTWLIKEKESYSG

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