NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209503_10000089

Scaffold Ga0209503_10000089


Overview

Basic Information
Taxon OID3300027859 Open in IMG/M
Scaffold IDGa0209503_10000089 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)61275
Total Scaffold Genes94 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)87 (92.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-17.283Long. (o)2.9768Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011663Metagenome / Metatranscriptome288Y
F012878Metagenome / Metatranscriptome276Y
F072406Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0209503_1000008916F072406N/AMELVFALITYLGTAKIDVSYFKSINDCLYFAKRINSNVSIPTIQQGTPRKYTAVCEPKKVNNKTKVY
Ga0209503_1000008950F012878AGGAGGMAVSEKSLANLKTIDSPDMANEYRERGLETRKRNKQKREMAKEAIKAMKEMGDEAPSAIEALKYVLTQAMESNDTEQIIKVSSILAEYQAPKLSRQDITQTNMDVNDMTEEELEEELKKFSLQ
Ga0209503_1000008974F011663GGAGMFEAFVLVCLMGSTEICHTLEDLEGPYKTKKECVKRAYEIASELPEYMPSYYALKYKCNKQESEIQL
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