NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209503_10000240

Scaffold Ga0209503_10000240


Overview

Basic Information
Taxon OID3300027859 Open in IMG/M
Scaffold IDGa0209503_10000240 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37597
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (50.98%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-17.283Long. (o)2.9768Alt. (m)Depth (m)30
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014155Metagenome / Metatranscriptome265Y
F017325Metagenome / Metatranscriptome241Y
F019666Metagenome / Metatranscriptome228Y
F020709Metagenome / Metatranscriptome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0209503_1000024033F017325N/AMQDYFDELHKALKDFHAHEEDQLKPLYMLIKVDVDKDIVHNQCEAGKYAVNHCNRLEYELADWYYPDDEQYPYIAK
Ga0209503_1000024035F019666AGGAGGMPHIYIPELFITQQEYDMINDNDVPIDVFISNKIRNDDIFVYIQETDCTYKRARNYNWDSNNLSENPDKRSTICDI
Ga0209503_1000024042F014155AGGAGMNHQRFKFYHHSTEYYRQLSNSITHLEQTCKDINYTVLPSTINYNRKSKFIKSNSNTNKSHKKVG
Ga0209503_1000024043F020709AGGAGMTNIKTQDKTAFGRTLHYVTDPVQADALQTLTGKKTLTDKDIVCLQILGLNVNGVNYVNQLALAV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.