Basic Information | |
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Taxon OID | 3300027859 Open in IMG/M |
Scaffold ID | Ga0209503_10000407 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 27930 |
Total Scaffold Genes | 54 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (18.52%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | South Atlantic Ocean | |||||||
Coordinates | Lat. (o) | -17.283 | Long. (o) | 2.9768 | Alt. (m) | Depth (m) | 30 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F003492 | Metagenome / Metatranscriptome | 483 | Y |
F015742 | Metagenome / Metatranscriptome | 252 | Y |
F016667 | Metagenome / Metatranscriptome | 245 | Y |
F100986 | Metagenome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209503_1000040732 | F100986 | GAG | MTRRKIYEHLIGTNVFGIRDKIKQFKKARRKRKNEKI |
Ga0209503_1000040739 | F003492 | N/A | MAELLTDDIIIEKLEQDGFMEEPDGPWILEYIEEEHGGKLDNTSDYIDDKWTLKIYSESTYDSYDIYWCTHEDRPYVSQDGYYYEDYSDWSDKAVDELTSGSDVWIENHIWDDMEYDFNYRLGEWWQDVYQELFDERKEELLDSGDYYVEKED |
Ga0209503_1000040743 | F015742 | N/A | MDSKKAYEMIKEDIVDRESAYLCTELERALDRIINYTDPLDDTMFRNIKAPAIKLLKEWH |
Ga0209503_1000040746 | F016667 | N/A | MEMKINKNLRRVVVTLSLIGAGFVYGKQTGEQEILNRWEDRWFDSEWYDYKSIEDILYDKEWDNYLFTNND |
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