NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209503_10000407

Scaffold Ga0209503_10000407


Overview

Basic Information
Taxon OID3300027859 Open in IMG/M
Scaffold IDGa0209503_10000407 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27930
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (18.52%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-17.283Long. (o)2.9768Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003492Metagenome / Metatranscriptome483Y
F015742Metagenome / Metatranscriptome252Y
F016667Metagenome / Metatranscriptome245Y
F100986Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209503_1000040732F100986GAGMTRRKIYEHLIGTNVFGIRDKIKQFKKARRKRKNEKI
Ga0209503_1000040739F003492N/AMAELLTDDIIIEKLEQDGFMEEPDGPWILEYIEEEHGGKLDNTSDYIDDKWTLKIYSESTYDSYDIYWCTHEDRPYVSQDGYYYEDYSDWSDKAVDELTSGSDVWIENHIWDDMEYDFNYRLGEWWQDVYQELFDERKEELLDSGDYYVEKED
Ga0209503_1000040743F015742N/AMDSKKAYEMIKEDIVDRESAYLCTELERALDRIINYTDPLDDTMFRNIKAPAIKLLKEWH
Ga0209503_1000040746F016667N/AMEMKINKNLRRVVVTLSLIGAGFVYGKQTGEQEILNRWEDRWFDSEWYDYKSIEDILYDKEWDNYLFTNND
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