NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209503_10004691

Scaffold Ga0209503_10004691


Overview

Basic Information
Taxon OID3300027859 Open in IMG/M
Scaffold IDGa0209503_10004691 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6266
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-17.283Long. (o)2.9768Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026437Metagenome / Metatranscriptome198Y
F026741Metagenome197Y
F028649Metagenome / Metatranscriptome191N

Sequences

Protein IDFamilyRBSSequence
Ga0209503_1000469110F026741AGAAGGMTNDKPNLTNSHFAELMDNQFGDLLKPKKFYPTITVEYSPNKEEWEEIAETIWITALEGGSGHWIDNIHTEDEFDLKNGYSVVEYNFDIAIHHGSDGWGDDDVDIERVKAFDVIVDGINLLDPERQRLALTVSELGQLDANDCDYIIQLGVFGKEVYC
Ga0209503_1000469113F026437GAGGMKYSVGNIDEQHGEFEVEQTILFATAGDADQVMDEIAKDWYGLDHHDSDGLTEGMYWNGGMAYGAGCYYEVTKATYDELKAKRVFTELWREN
Ga0209503_100046912F028649GGAMFIAHYKTIAKRKAQVFGMMLIAFGVFGWAGYHCLFMEDMFANVTGIMLCSISIVGVFWSILGCLFSIQDMRN
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