NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209503_10015250

Scaffold Ga0209503_10015250


Overview

Basic Information
Taxon OID3300027859 Open in IMG/M
Scaffold IDGa0209503_10015250 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3406
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-17.283Long. (o)2.9768Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060813Metagenome132N
F089017Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0209503_100152503F089017GGAGLNDNVIEFPTKFKPNAPKIVDLDAVRMQEDLDFADNLAEGLMINLIHNVGENGFDIKKDRFIGDISFLNEVVRGALYRQMGFTHPMQDFMDLIVKTEINQEDKTIMTKVNLNKIDDLLPQSKDDGNGDDIS
Ga0209503_100152507F060813GGAGGMNKKLKYIVYTQMNKLGKTGEFDNARDAIKWAKENVYMFDYLKERKDTWEILFEENLVWIGKGEVIEC

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