Scaffold Ga0209503_10035214

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209503_10035214

Scaffold Ga0209503_10035214

Overview

Basic Information
Taxon OID	3300027859 Open in IMG/M
Scaffold ID	Ga0209503_10035214 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2260
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	South Atlantic Ocean
Coordinates	Lat. (^o)	-17.283	Long. (^o)	2.9768	Alt. (m)		Depth (m)	30
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F057434	Metagenome	136	N
F061908	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209503_100352142	F057434	N/A	MFHLIYTRSNYDMESIGGHFESHITLYRNVPYSELSKFLEMQKDPELLKECDTRYFEYQQERGITDTSFHSQISIVDDEEYFKTYKEVYRNSYNGPSGLIPEEEDYFMEYGQKTNFMLIHDYDPNYTWFGKDWTQEMINAEYEKRALDNSARV
Ga0209503_100352143	F061908	N/A	MITKTKIENCFTMTVRQDKLYKSMTQQEQDTFDYLVHVKDRKIDDVFFFLHSTFNPSRDDFKKPSFANLSTEQVIRTCQQLQLKDAA

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