NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209503_10040932

Scaffold Ga0209503_10040932


Overview

Basic Information
Taxon OID3300027859 Open in IMG/M
Scaffold IDGa0209503_10040932 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2102
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-17.283Long. (o)2.9768Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004850Metagenome / Metatranscriptome421Y
F009959Metagenome / Metatranscriptome310Y
F050305Metagenome145Y
F077194Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0209503_1004093210F077194N/AMETLTILDFGSGEVHQYHNVNYEKYEMELDEFVSVQLGYNLNEVEYMFHTDKTIYNLTNELC
Ga0209503_1004093211F050305N/AMNNLNTTIDKVAMSEFDMHYHQLGDNEKQWCHDEMVNNPKWLKKDWEKPLWSMADKWKAGLPIYKTYK
Ga0209503_100409325F009959N/AMTEQEVIDKVCDKVVNTIYNELDYYMFAELGYTETNDKYVEDADMLIIKVIKELNK
Ga0209503_100409329F004850N/AMLDTYEFEIYYGDLEEPLYLTNDKNYICDDMRDFMEELGIVMDEIIYKVEKL
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