NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209503_10153448

Scaffold Ga0209503_10153448


Overview

Basic Information
Taxon OID3300027859 Open in IMG/M
Scaffold IDGa0209503_10153448 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1095
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-17.283Long. (o)2.9768Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067634Metagenome / Metatranscriptome125Y
F097119Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209503_101534482F097119AGGAGMQNKLISNREMFRQLLARDITAILEDVNAGTWVDVAYLRNNLHNSLSEKHYFDLHTSKGWTYLDFADRFYRALQSINDKGYGLTIRKDKQTNKLFVFSTKFADNYVEAIADTFEDWTTCYKSNRGYEINTAKDEAVA
Ga0209503_101534483F067634N/AYSDAGDTFYEDLGNVTFGNNLMWDDAQHDYTSAVDNFSCLLGNYNSYTTVDSLSQMLNNMYHTMSDHSSETDSYICEIRDSIKKMCANNPNIAHAYDHPTRTTTISFVGNVDKMYKAYMSKLNS
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Institute for Fundamental Biomedical Research
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