NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209611_10006627

Scaffold Ga0209611_10006627


Overview

Basic Information
Taxon OID3300027860 Open in IMG/M
Scaffold IDGa0209611_10006627 Open in IMG/M
Source Dataset NameHost-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18859
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (23.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Bryophyta → Bryophytina → Bryopsida → Dicranidae → Pseudoditrichales → Ditrichaceae → Ceratodon → Ceratodon purpureus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003575Metagenome / Metatranscriptome478Y
F004302Metagenome / Metatranscriptome444Y
F017086Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0209611_1000662710F003575N/AMVHDLNPTCNSNNPNLTIVFFHGIAFGTNDEWKETWTTCPTNNREECICWPEKWLPEDLNNNVRILSLSYDSNIVASVHNDVIEIGKNLIQSLVTNSRCDNLLYL
Ga0209611_1000662711F017086N/AMGKSYGLKGKGVDLSQGPPKKKRDVVRISAVIETPLVPAENAPSSSGWQSNVMLLLNLMMSFLCTVFSWAFSSYMLKFDFSLFFFILFGC
Ga0209611_100066279F004302GGAVALVAYSFGGLVLKSLVVEARKHVHQWPRNCLDDEVHKCCKTFLSNVKGVVFYGVPHAGGTQYLSNYFTWQHQQINTLSKYATQSGFVFNLQSFNPQMEHLSTDFKNAVHEDLNIYAFGEGLPLDNKWVGFSFHHIENYPTRFIN
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