Basic Information | |
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Taxon OID | 3300027860 Open in IMG/M |
Scaffold ID | Ga0209611_10021059 Open in IMG/M |
Source Dataset Name | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7583 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (55.56%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Bryophyta → Bryophytina → Bryopsida → Dicranidae → Pseudoditrichales → Ditrichaceae → Ceratodon → Ceratodon purpureus | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Minnesota | |||||||
Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F037022 | Metagenome / Metatranscriptome | 168 | Y |
F085030 | Metagenome / Metatranscriptome | 111 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209611_100210593 | F037022 | GGAGG | VFKSLVVKLKRASTIQNPTNSLSKATVPRAKVFLRNVRGVAFYAVPHAGSSNIAKYVNKLLRCNNRHHPGIMDNIQPWQRDMEQLSVDFDRIVTENEINVYAFCEGRRMEQAVRMCWMK |
Ga0209611_100210594 | F085030 | GGA | VCNVLNAEFWWQSDWPVHQLWPPPEGNRRTELDVVLFHGLQLTATDTSDAWSSTWTQRGHDDVCWPQEWLPFDLGEAVRIFSVSYNAHVVTSPHDHVSEIADNLFQTLINPRYKSRLFGYENAMLGQM |
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