NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209611_10046726

Scaffold Ga0209611_10046726


Overview

Basic Information
Taxon OID3300027860 Open in IMG/M
Scaffold IDGa0209611_10046726 Open in IMG/M
Source Dataset NameHost-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3579
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040978Metagenome160Y
F068355Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0209611_100467261F040978AGGAGMIGPRHAPPGAYVDDPAEKLDSPASEQPSVFTLASHGMTRIKEWAARGKAKQRALRHDLVTLSLCPEMLPCKHPSAAWCAREHGVSRQWASRLQQEFVREFGDHIQFRGQRFLNRASA
Ga0209611_100467263F068355N/AMALKGASPIPVRCFERELAGSRLGISFHLPSRRRFIPYSWLLYADLNEAATELYLHYSHSVVTIAGTNLGELHEAAELFQLSVVRELPSSAYEGKSPGVTRIEIAEKASE
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