Basic Information | |
---|---|
Taxon OID | 3300027862 Open in IMG/M |
Scaffold ID | Ga0209701_10008259 Open in IMG/M |
Source Dataset Name | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 6806 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: California, Eel River Critical Zone Observatory | |||||||
Coordinates | Lat. (o) | 39.7291 | Long. (o) | -123.6419 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001916 | Metagenome / Metatranscriptome | 617 | Y |
F003226 | Metagenome / Metatranscriptome | 499 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209701_100082595 | F003226 | GGAGG | MSKQLYVKAPFCSEHQRLLEESQSALEIWDEHRAEVCRTRLNGKEAGDELLRLQVRYARAYTLLQRHEHSCLICQLVARIEGSDSENNSDVLSDSTLCA |
Ga0209701_100082597 | F001916 | AGGAGG | LLSDHLITIAGRSITITSHDMFMTGVSLVIGLVFWAALYFSRKRIVVLKRSSGTDQLTLELSRIADALERIANHPADRAIAATRRQHQTQPTPQRESQGIAYSMFGR |
⦗Top⦘ |