NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209701_10287831

Scaffold Ga0209701_10287831


Overview

Basic Information
Taxon OID3300027862 Open in IMG/M
Scaffold IDGa0209701_10287831 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)948
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036810Metagenome169Y
F070426Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0209701_102878311F036810AGGAGMSQPERTRVSRWARLRSFAVGKCKAVQLSIERRSFERKLERIVRTALAHQSVGLPAGHPQYKLLTRQADSTCANFAHRWNIKPNLLEAQIPAIRKLKSLAEPPPKPEPAVLVSLGVAGAMTLSFLIGVLGGLTSIGYHLIGGR
Ga0209701_102878312F070426GGAGGMLLELIVATEASVLSASWIRRSRMRRQQILMGGSTPEINLPFLDRYLRQQPTNPTRFQTFAAKKLVAVCRQAVHTQAFELLVLKLIQSASRRSRRESEISRVEVIL
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