Basic Information | |
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Taxon OID | 3300027867 Open in IMG/M |
Scaffold ID | Ga0209167_10000004 Open in IMG/M |
Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 595036 |
Total Scaffold Genes | 542 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 430 (79.34%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
Associated Families | 9 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Pennsylvania, Centralia | |||||||
Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002004 | Metagenome / Metatranscriptome | 605 | Y |
F002288 | Metagenome / Metatranscriptome | 574 | Y |
F004485 | Metagenome / Metatranscriptome | 436 | Y |
F036259 | Metagenome | 170 | Y |
F060169 | Metagenome / Metatranscriptome | 133 | N |
F062503 | Metagenome / Metatranscriptome | 130 | Y |
F064445 | Metagenome / Metatranscriptome | 128 | Y |
F078444 | Metagenome | 116 | Y |
F087511 | Metagenome / Metatranscriptome | 110 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209167_1000000423 | F036259 | GAG | MFGAHRRGFDWKEIAKVLHVTRAVGRATFWREIKRSRSKSVAAQPPAIVIQDESDSDAKKLRKPRAYR |
Ga0209167_10000004236 | F004485 | AGGAGG | MTYREQYTTYPASALQSYRFWSAHVDALERHLSAGTWAMAAVTVVLIAYPIARTVIPPILHGIVPDVVQAVLNLI |
Ga0209167_1000000424 | F002288 | GGA | MGEADGVHKRRMFRWPKEARELVREYKERTKRSQELTETGRRMLVTKLAATSGNPRDACLRFLRELGVNHKRAYREWTKSEQQRLLDLITAMPVAEAAKILRRPAGSVRSMLHRLGIGGKTGREWFTKFSLSRALHTRPDEIQKWIDLGWLKSRSLTTAGTKANIIHADDFCQFVKEHGRAVASRRLTYEALWFVQNYVFPPSHAELLSVRGTYKRHDAGDETAGNTESQSVSGSEEDGGQEG |
Ga0209167_10000004366 | F064445 | AGGAG | MKNSGIPPELAPNITIRVSGKLFQGHLAYLDQLVQTALACDLWALLDLAQLQELDRAAVLYLMRGEGHGFGVVSCPNFIREWMFYEATPRVA |
Ga0209167_1000000445 | F062503 | N/A | MGVELTMKDLSQVLSQKEMDIERVRKEIKALHFVIPLLAEDADRLEHGLASLPVPQLGETGTTAVKEQPR |
Ga0209167_10000004485 | F060169 | GAGG | VGRLLLIDVVGAAAALGLWYLVFALYNRRKGKAALHWVQDACAGKGRVLDSRWLGLGNSRLHARLQFPSRGFEDARVTLRFRPRPLPVHWIVSCCHRQRETLTFEADLGGSPSFHLEVVRHRWSARSRGVGTRQRDEREWDLVHPGPLILTTRTHWKEDPTSELNALMAVRQQDVLQVRFRPESPQFSVTVTLDALSDPATAASFLSTLRELAAGASAHRQ |
Ga0209167_10000004492 | F087511 | AGGAGG | MSVSADRTMGRSMSVGGPLAASSYVLWVPLMGGLWVLTNVGFVYLGLHVAYSLPCCLFAGILNGTLFSVIAVAKASERFQAGVTGLLSGMSLSGLRKDGSMMWKATESVHAFVDQALRALGIEGGEQFHQQIEQQALYIIWTTLFVVVASLIAEWVRTSRAAES |
Ga0209167_1000000455 | F002004 | GGA | MRTIPNSRRLDGHISRALNKIKKPSTAEEITELLNRDLEPQDRPFQTKEVAEWLRNAGDTALTLYWSRIRLRR |
Ga0209167_1000000473 | F078444 | AGGAGG | MSDAKTHSSERVLTNQREEEVIEIDENGVVHAVGYTPSQLKSTVLRDPEGEYGND |
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