NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209167_10000018

Scaffold Ga0209167_10000018


Overview

Basic Information
Taxon OID3300027867 Open in IMG/M
Scaffold IDGa0209167_10000018 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)248901
Total Scaffold Genes198 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)127 (64.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000279Metagenome / Metatranscriptome1383Y
F000838Metagenome / Metatranscriptome866Y
F001031Metagenome / Metatranscriptome800Y
F001748Metagenome / Metatranscriptome642Y
F008095Metagenome / Metatranscriptome339Y

Sequences

Protein IDFamilyRBSSequence
Ga0209167_10000018124F000279GAGGMTHQANHAATEEIALPENLLPLGTVLGNGVTPMDVSMVLAKIFRVQYTEVALLRLESGLLRFVFPEYLRTTGSIPLSSKAVAAHTALSKKAEIFNNFARVKHASIFETIKPNANDSEEATAPSPIQKLMSVPIMDHELNVVGVIQISRKGLDARFAQDFSREDLHDLELAAGVLASAPAILSN
Ga0209167_10000018134F001031AGGAGMKPAIEVSSRVSNDPYQKTVSCLRCEQKLERYQLMKVHLIPGSGSHGLAILSCPKCGHVEFVAESSPLLNSLELISVDTGDGD
Ga0209167_10000018185F008095GAGGMMKRVEITPMDKSRDQDQGKGAVEQDQNNQGGNTSMKGQLGHRDEDVELKGADSDLSG
Ga0209167_10000018186F000838N/AMSGRAIRTISRILFFLCGGTSLFTGVPYLMLQGIDMPVHRAWFLFPVALGVVGVFSVTVAVLPRSWIAKACKRDRDDVQLFLTPLKLLGAFAPISYLLALLAYLAPHSWDLDPTLMLSLCPLYFVKLAFDPSLVAVFFMLAPMNAAVYGALGLTLGYAWLACRRRTQVRLS
Ga0209167_1000001873F001748N/AMKNANLETKNGIVQNKAISLLLLAAVILATALVSSTHAFAAPKSKAPSIPPFPGTLVNARYVYVTSYDGDQFDPNLLPSDRDAIGAVQDALQKWGKFTLVYQYHQADIVLVVMSRPSEDVLAVYDAHGWPEGQYLWRMMRRGGLQTGETPLFTDLQKAFETATAK
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