NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209167_10002803

Scaffold Ga0209167_10002803


Overview

Basic Information
Taxon OID3300027867 Open in IMG/M
Scaffold IDGa0209167_10002803 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9263
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013791Metagenome / Metatranscriptome268Y
F095767Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0209167_100028031F095767N/AMRERRCTIDSSCVIALDHLELVPQLSLLFSTVLVPKAVRQDLFKRRATKDRVQSFFGAYAFFQRCDDYDQGTVDFLLAERTRQGARDRGEVEAVVQASQFGAVVIVDDPWGRNSPRVTIWSFMERYGFLKRFHELELISGTALRDCVVSLRGRGIRLPWETVKAGRTASVIAAVIAAPPTKHGNVLAFIIDRPIPHLLKIDSDTPLH
Ga0209167_100028032F013791AGGAVFISYGAAADQVTALRLQALGAVNGLTVYLPPAYTRNDPTVLDPDASQKLHEAEVVLGVVEAGLSQACLHELNAGMALRKHLIVMSNPAFAAQFEPSFGSNLVLIDPANPGAAETGIMEYLKSIGAQQDTKKALLALGTLALGLLIFASADRD
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