NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209167_10013883

Scaffold Ga0209167_10013883


Overview

Basic Information
Taxon OID3300027867 Open in IMG/M
Scaffold IDGa0209167_10013883 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3815
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008510Metagenome / Metatranscriptome332Y
F094508Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209167_100138832F008510AGGAGMKQAIRISVLMCGLVGTYVSAAVPQVPAPDGGPILVCPPQQQLQGSCVQRPPMMK
Ga0209167_100138833F094508GAGMRTLYYGLWIAHPVLLTVIAGVMLRRGQHRKFKFFFAYITTQILSFAVLFPVRYNYSAWFYLSWISTAISVALGFKVIHEAFLDAFRPFHALRDLGTVLFKWAGLVMLLVAGVVSLSTNSSETVPWVQAILTAQRCVRIIQVGMVLFLLFFAQYLGVSRRRLSFGIAMGFGCFAIVELSLVASWVGEHLSTRSMEMVNMVAYNCSLLIWAGYALAKSPAKETPASLLRPQRWEQSLTDIHHPLPSDSLIPMFEGMVDRALSRTQGSSSGTVSQEAVASTKATAARAGSGAGISGNPGTRK
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