NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255053_10042795

Scaffold Ga0255053_10042795


Overview

Basic Information
Taxon OID3300027868 Open in IMG/M
Scaffold IDGa0255053_10042795 Open in IMG/M
Source Dataset NameSeawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)2164
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)50.0528611Long. (o)-123.8211389Alt. (m)Depth (m)425
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000704Metagenome928Y
F000730Metagenome / Metatranscriptome917Y
F001606Metagenome664N

Sequences

Protein IDFamilyRBSSequence
Ga0255053_100427952F000730GAGLVNEFIPSELIPIIWFICISVTGYVFFRVFSSTLKEKFRLTNLSKKKSEATGNTDGQVDSLIDNAPRMLNEVNKIIAEQKSAGVPDEQMKVILQKKQLLELVSNNAEVINIIGKPVLKKLLGFVRAF
Ga0255053_100427953F000704AGGTGGMPHDTGEIQPSKVKSVSVYNVGDYGNDMFLPFTDVGLTETSITFSTAVLTRDTEDSNQPMDDFPAVYSDTDTGVVLNEGNDTAFSQTYSYNPDMTAIIYAIHLHFPAAVICSAFTSGTLNVGALHLKITERSTNNRLLYENTFQSGAANLTGTGTSLHIFQQDVVETILVRKGNPIDILVELITVTTGTNTRQEGLVTLAPNIKTAVLKRFTPAGIALHLHADLSHADGVYKYTKNRVSTLGQ
Ga0255053_100427954F001606GAGGLTYGYDDVTTTSLGTATAETQLNSGTSLSAPDPAHGFLAVIPYQSESAAFTVDESLLTAFRIQSDDVSIEPKKFVLPNVNTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYGQPLVANTVAPICGATVIYDTDGTNGAEQYYTRPTNETAGATAANTRTEGGSMTIQGGNEITGLYTVVSGATATASQHDVGYSEFISPDFNTSMPYRVAIQPTYTGLGSAANAVTGGGGIMQYNMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRFSRN

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